Biology software is a type of application software that is used to compare biological sequences, visualize biological data, etc. Here, we have listed all the common software for biology.
Common Software For Biology
Other Useful Software For Biology
BioJAVA
• On-premises
• Process biological data, analytical and statistical routine
• Manipulate biological sequences and 3D structures
• Distributed annotation system, supports DNA & protein sequences, etc.
BLAST
• On-premises
• Compare primary biological sequences
• Amino-acid sequences of proteins, nucleotides of DNA/RNA
• Sequence searching, a large dataset of biological sequences, etc.
CP2K
• On-premises
• Provides modeling framework, methods such as DFT using Gaussian and plane waves (GAPW), GPW
• Atomistic simulation of liquid, materials, crystals, etc.
• Efficient and accurate atomistic simulations
GenGIS
• On-premises
• Combine digital map data with biological sequence information
• Geospatial analysis of traditional and genetic biodiversity
• Navigate and explore data in 3D interface, etc.
Plink
• On-premises
• Basic and large scale genetic analysis
• Whole-genome association analysis
• Identity by state (IBS), identity by descent (IBD), basic statistics, etc.
Genesis
• On-premises
• Quantifies the physical framework of the nervous system
• Neurobiological simulation
• Model network of neurons, sub-cellular processes, etc.
MS-Excel
• On-premises
• Spreadsheet, data visualization, and analysis
• Graphing tool, pivot tables, calculations and computation capabilities
• For both experts and novices
GROMACS
• On-premises
• Molecular dynamics
• Simulate proteins, lipids, and nucleic acids
• Simulate Newtonian equations of motion for systems with hundreds to millions of particles, etc.
SAMtools
• On-premises
• Interaction with short DNA sequences
• Read alignments in SAM (sequence alignment map), BAM (binary alignment map), and CRAM formats
• Variant calling, sorting, indexing, alignment viewing, etc.